PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00977.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 203aa    MW: 22502.2 Da    PI: 8.6384
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00977.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-201968255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +gr++AeIrdp +   + r++lg+f++aeeAa+a++aa+++l+g
  Rsa1.0_00977.1_g00016.1 19 RYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDAAARNLRG 68
                             69*******.**********743...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-141968IPR001471AP2/ERF domain
CDDcd000183.34E-171975No hitNo description
Gene3DG3DSA:3.30.730.108.9E-321976IPR001471AP2/ERF domain
PROSITE profilePS5103223.4461976IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-221977IPR016177DNA-binding domain
SMARTSM003801.1E-371982IPR001471AP2/ERF domain
PRINTSPR003675.3E-112031IPR001471AP2/ERF domain
PRINTSPR003675.3E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRKGRGSSVV PPALPGSVRY RGVRKRPWGR FAAEIRDPLK KSRVWLGTFD SAEEAARAYD  60
AAARNLRGPK AKTNFHIDSS PLNHRNQNRI DPFMDHRLHG VEEEEEEVII SRPASSIMSS  120
TVKSCGGSRS VAKRYPRIPP VATEDCRSGC DSSSSVVDDD GDDIASSSSR RKQPFEFDLN  180
FPPLDGVDLF AGAYDLHCTD LRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-192075359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-192075662ATERF1
3gcc_A3e-192075662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2479695e-47DQ247969.1 Brassica rapa subsp. pekinensis putative ethylene responsive element binding factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013679809.17e-83PREDICTED: ethylene-responsive transcription factor 7-like
SwissprotQ9LDE45e-82ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A078HCE78e-84A0A078HCE7_BRANA; BnaC03g41530D protein
TrEMBLA0A087HB511e-83A0A087HB51_ARAAL; Uncharacterized protein
STRINGBra001784.1-P1e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.13e-67ethylene response factor 7